Description
The EpiReport package allows the user to draft an epidemiological report similar to the ECDC Annual Epidemiological Reports (see https://ecdc.europa.eu/en/annual-epidemiological-reports) in Microsoft Word format for a given disease getAER()
.
Through standalone functions, the package is specifically designed to generate each disease-specific output presented in these reports.
The package includes:
-
Table with the distribution of cases by Member State over the last five years
getTableByMS()
-
Seasonal plot with the distribution of cases at EU/EEA level, by month, over the past five years
getSeason()
-
Trend plot with the trend and number of cases at EU/EEA level, by month, over the past five years
getTrend()
-
Age and gender bar graph with the distribution of cases at EU/EEA level
getAgeGender()
Two types of datasets can be used:
- The default dataset included in the
EpiReport
package which includes Denger data for 2015-2019:EpiReport::DENGUE2019
; - Any dataset specified as described in the package vignette.