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Creates a ggplot2 visualization of non-sentinel severity data, with facets by country and colored by pathogen.

Usage

plot_nonsentinel_severity(
  data,
  date_breaks = "1 month",
  date_format = "%b %Y"
)

Arguments

data

A data.table or data.frame containing severity data, typically output from get_nonsentinel_severity. Must contain columns: date, value, pathogen, countryname.

date_breaks

A string specifying the date breaks for the x-axis (e.g., "1 month", "2 weeks")

date_format

A string specifying the date format for x-axis labels (e.g., "%b %Y" for "Jan 2024")

Value

A ggplot2 object

Examples

# \donttest{
data <- get_nonsentinel_severity(
  date_min = as.Date("2024-01-01"),
  date_max = as.Date("2024-06-30"),
  pathogen = "SARS-CoV-2",
  indicator = "hospitaladmissions"
)
plot_nonsentinel_severity(data, date_breaks = "1 month")

# }