Dataset describing the parameters for the epidemiological report production

A dataset describing the parameters to be used for each output of each disease report for all 53 health topics included in TESSy

Usage

AERparams

Format

A data frame with 53 rows (corresponding to the 53 health topics) and 24 variables:

HealthTopic: Disease code that should match with the health topic code from the disease-specific dataset e.g. ANTH, SALM, etc.
DG: (optional) Disease group e.g. FWD
DP: (optional) Disease programme e.g. FWD
Label: Disease label to be used in the report e.g. salmonellosis, anthrax
FrequencyCategory: (optional) Frequency of the disease e.g. VERY RARE, NON-RARE, etc.
MeasurePopulation: Type of population presented for this disease i.e. ALL or CONFIRMED cases
DatePublicAtlas: Date of latest availability in the public access of the Atlas
TableUse: Type of table to present in the report i.e. NO table, ASR table presenting age-standardised rates, RATE table presenting rates or COUNT table presenting the number of cases only.
TableRatesLabel: Label to use in the table for rates e.g. RATE PER 100000 POPULATION
TableRatesNoDecimals: Number of decimals to use when presenting rates
TableASRNoDecimals: Number of descimals to use when presenting ASR
AgeGenderUse: Type of age and gender bar graph to present i.e. NO graph, AG-COUNT Bar graph presenting the number of cases by age and gender, AG-RATE Bar graph presenting the rates of cases by age and gender, AG-PROP Bar graph presenting the proportion of cases by age and gender, A-RATE Bar graph presenting the rates of cases by age.
AgeGenderBarGraphLabel: Label to use in the age and gender bar graph
AgeGenderGraphNoDecimals: Number of decimals to use when presenting rates in the age and gender bar graph
TSTrendGraphUse: Logical Y/N specifying whether to include a line graph describing the trend of the disease over the time
TSSeasonalityGraphUse: Logical Y/N specifying whether to include a line graph describing the seasonality of the disease
TSSpecific: Logical Y/N for specific line graph inclusion
MapNumbersUse: Logical Y/N specifying whether to include the map presenting the number of cases by Member State
MapRatesUse: Logical Y/N specifying whether to include the map presenting the rates of cases by Member State
MapRatesNoDecimals: (optional) Number of decimals to use for presenting maps
MapASRUse: Logical Y/N specifying whether to include the map presenting the age-standardised rates of cases by Member State
MapASRNoDecimals: (optional) Number of decimals to use for presenting maps
Transmission: Not implemented yet
TransmissionNoDecimals: Not implemented yet